PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G169100.4
Common NameB456_002G169100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 504aa    MW: 54843.7 Da    PI: 8.6673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G169100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Gorai.002G169100.4  6 FICEVCNKGFQREQNLQLHRRGH 28
                        89*******************88 PP

2zf-C2H213.40.0002382104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.002G169100.4  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-7528No hitNo description
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PfamPF121712.4E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-777102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQENARQ PPSFNSIGNH LYGSTSNMSL GLSQVGTQMS SVQDQTSNNS  180
GGRDIFKLGG VARSTQFDHL LLSPSMGSSS FRPQQSMVSS AAFFMPESNQ EHHPQQGILG  240
NNKQYHQGLM MQFPEDIQNN TTNTPSPPSF FNLSFLSNCG NGTNPDANLT SSGLLTPEHF  300
DNETGGGGGG TSEASDPFSN TVMGNQITTN IPSVFAQSNN IAVQMSATAL LQKAAQMGST  360
SSYKNASLMR SFGNSNFGGT LGDSTGNNLH ELMNSIAGGG SNTFSFGHGQ ENPYANRSSV  420
EQEKHVEQQP QILNVSGGGG SDRLTRDFLG VGQIVRSMSM GGVSQREQQQ QQEAMGLSAL  480
GSERSNITAP TNHQCLGGNG NFQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145880.0JX614588.1 Gossypium hirsutum clone NBRI_GE58088 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467157.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_012467158.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X2
SwissprotQ9ZUL31e-121IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D2MC440.0A0A0D2MC44_G
STRINGPOPTR_0008s14180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-117indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]